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S. islandicus M.16.4

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Examples: M164_2614, M_16_4_gene57, gene78, CP001402:1..10000.
  
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Core genes
Gained genes
Annotation set
Multiple events
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DNA/GC Content
Pop-up Description: When the cursor passes over a marker for an annotated region a descriptive pop-up note with appear containing the following information:
  • Gene name
  • Location (start and stop)
  • Gain (name of the strain if the gene was gained at the strain level; Lassen, Yellowstone, or M-sub if the gene was gained at the populaiton level; North America or Mutnovsky if the gene was gained at the regional level; and - if there is no gain
  • Loss (name of the strain if the gene was lost at the strain level; Lassen, Yellowstone, or M-sub if the gene was lost at the populaiton level; North America or Mutnovsky if the gene was lost at the regional level; and - if there is no loss
  • Distibution by genome (the number of homologous copies of a gene found in the different strains of S. islandicus and S. solfataricus
Track Description: Annotation tracks can be turned on or off by adjusting the check boxes below in the "Tracks" section then clicking the "Update Image" button.
  • Core genes
  • genes found in all seven of the sequenced S. islandicus genomes
  • Gained genes
    • genes that have been gained at some point in that strain's evolutionary lineage
  • Lost genes
    • genes that have been lost at some point during another strain's lineage
  • Multiple Events
    • gene that have been gained at some point in that strains evolutionary lineage but also lost in another strain
  • Pseudogenes
    • genes that have been annotated as pseudogenes
  • DNA/GC Content
    • graph of the GC content where the window size is equal to 1% of the selected interval
  • CRISPR
    • regions annotated as CRISPR repeats
  • ncRNA
    • genes that code for non-translated RNAs
  • tRNA
    • genes that code for transfer RNAs
  • rRNA
    • genes that code for ribosomal RNAs
    • Annotation set
      • an all-inculsive annotation track
    To cite the S. islandicus Genome Database please use this reference: Reno, et al. (2009). For comments and inquiries, please contact us at sulfolobus [at] life.uiuc.edu.
    Funding for this work was provided by the University of Illinois at UrbanaÐChampaign and NSF DEB Grant 0816885. S. islandicus genomes were sequenced by the U.S. Department of Energy's Project 0178Ð051129 under the U.S. Department of Energy's Office of Science Biological and Environmental Research Program and the University of California, Lawrence Livermore National Laboratory (Contract W-7405-Eng-48), Lawrence Berkeley National Laboratory (Contract DE-AC03Ð76SF00098), and Los Alamos National Laboratory (Contract W-7405-ENG-36).